UniProt data
UniProt name: GPA33_HUMAN (Q99795)
Gene name: GPA33
Organism: Homo sapiens (Human).
Function: May play a role in cell-cell recognition and signaling.
Subcellular location: Membrane; Single-pass type I membrane protein.
Transmembrane domains:
- 236-256, 21 AA, Helical. {ECO:0000255}.
Sequence: 319 AA
10 20 30 40 50 60
MVGKMWPVLW TLCAVRVTVD AISVETPQDV LRASQGKSVT LPCTYHTSTS SREGLIQWDK
70 80 90 100 110 120
LLLTHTERVV IWPFSNKNYI HGELYKNRVS ISNNAEQSDA SITIDQLTMA DNGTYECSVS
130 140 150 160 170 180
LMSDLEGNTK SRVRLLVLVP PSKPECGIEG ETIIGNNIQL TCQSKEGSPT PQYSWKRYNI
190 200 210 220 230 240
LNQEQPLAQP ASGQPVSLKN ISTDTSGYYI CTSSNEEGTQ FCNITVAVRS PSMNVALYVG
250 260 270 280 290 300
IAVGVVAALI IIGIIIYCCC CRGKDDNTED KEDARPNREA YEEPPEQLRE LSREREEEDD
310
YRQEEQRSTG RESPDHLDQ
CATM prediction
The sequence of GPA33_HUMAN returned 5 potential models
The positions at the dimer's interface are highlighted in yellow. The position at the crossing point is highlighted in orange.
| # | Sequence and interface | d | θ | Z' | ω' | Score |
|---|---|---|---|---|---|---|
| 240 250 + | + | + |
(Å) | (°) | (Å) | (°) | ||
| Model 1 | MNVALYVGIAVGVVAALIIIGIIIYCC | 6.9 | -28.1° | 2.4 | 50.1 | -42.9 |
| Model 2 | MNVALYVGIAVGVVAALIIIGIIIYCC | 6.4 | -46.9° | 4.8 | 55.9 | -36.5 |
| Model 3 | MNVALYVGIAVGVVAALIIIGIIIYCC | 7.3 | -46.6° | 1.4 | 45.1 | -24.8 |
| Model 4 | MNVALYVGIAVGVVAALIIIGIIIYCC | 7.2 | -39.8° | 5.1 | 44.1 | -17.6 |
| Model 5 | MNVALYVGIAVGVVAALIIIGIIIYCC | 7.3 | -48.1° | 4.4 | 34.7 | -13.5 |
Click on the model number to visualize its details below.
MODEL 1 DETAILS
Precited structure:
Click on the image to enlarge
Download model 1 structure: PDB, PyMOL session
List of hydrogen bonds:
| Donor | Acceptor | Distance |
|---|---|---|
| B, 237, LEU, HA | A, 236, ALA, O | 2.79Å |
| B, 240, GLY, HA1 | A, 237, LEU, O | 3.07Å |
| B, 241, ILE, HA | A, 240, GLY, O | 3.14Å |
| A, 237, LEU, HA | B, 236, ALA, O | 2.79Å |
| A, 240, GLY, HA1 | B, 237, LEU, O | 3.07Å |
| A, 241, ILE, HA | B, 240, GLY, O | 3.14Å |
