Putative uncharacterized protein encoded by LINC01006

UniProt data

UniProt name: CG013_HUMAN (Q8NI28)

Gene name: LINC01006 {ECO:0000312|HGNC:HGNC:48971}; Synonyms=C7orf13, MY040

Organism: Homo sapiens (Human).

Function:

Subcellular location: Membrane {ECO:0000305}; Single-pass membrane protein {ECO:0000305}.

Transmembrane domains:

  1. 177-197, 21 AA, Helical. {ECO:0000255}.

Sequence: 216 AA

10 20 30 40 50 60 MLASPARPTL RMLANHALST PHCACSPAPA PRTASASRRR CVPVEARAAG VFGDRLAGVF 70 80 90 100 110 120 GSRGLKHGGV QAPRPRVVRA EPRAGFAVVR SPRRLCGRSH APQPPAHLGL GPGCFPAVAV 130 140 150 160 170 180 VVPVPGSRAH RPFAALLVEG SFLGDPPIPP RRSGVLARGS AGADCLASSV TPGPSLWIPL 190 200 210 LLVAGCVSCF VGLAVCVWMQ ARVSPAWPAG LFLLPR

CATM prediction

The sequence of CG013_HUMAN returned 2 potential models

The positions at the dimer's interface are highlighted in yellow. The position at the crossing point is highlighted in orange.

# Sequence and interface d θ Z' ω' Score
        180       190       2
 +    |    +    |    +    |		 (Å) (°) (Å) (°)  
Model 1 ASLWIALLLVAGCVSCFVGLAVCVWMQ 6.8 -46.2° 2.7 47.0 -19.5
Model 2 ASLWIALLLVAGCVSCFVGLAVCVWMQ 7.0 -55.0° 1.5 45.0 -16.7
Prolines* PSLWIPLLLVAGCVSCFVGLAVCVWMQ          

* Note: this sequence contains Pro residues. CATM substituted them with Ala during the modeling. The positions are marked.

Click on the model number to visualize its details below.

MODEL 1 DETAILS

Precited structure:


Click on the image to enlarge

Download model 1 structure: PDB, PyMOL session

List of hydrogen bonds:

Donor Acceptor Distance
B, 185, GLY, HA2 A, 188, SER, OG 3.14Å
B, 189, CYS, HA A, 188, SER, O 2.82Å
B, 192, GLY, HA1 A, 189, CYS, O 2.77Å
B, 193, LEU, HA A, 192, GLY, O 3.41Å
A, 185, GLY, HA2 B, 188, SER, OG 3.19Å
A, 189, CYS, HA B, 188, SER, O 2.82Å
A, 192, GLY, HA1 B, 189, CYS, O 2.77Å
A, 193, LEU, HA B, 192, GLY, O 3.41Å