UniProt data
UniProt name: YB039_HUMAN (Q8NCU8)
Gene name: LINC00116; Synonyms=NCRNA00116
Organism: Homo sapiens (Human).
Function:
Subcellular location: Membrane {ECO:0000305}; Single-pass membrane protein {ECO:0000305}.
Transmembrane domains:
- 91-107, 17 AA, Helical. {ECO:0000255}.
Sequence: 138 AA
10 20 30 40 50 60
MLANDVRHQQ EMWGFRKVEG GVVQSLGKSS VEGETDGTIS EFREIQRLAA FASFLSHAPP
70 80 90 100 110 120
LNARRLLTPP PRRRPRCTPA AAMADVSERT LQLSVLVAFA SGVLLGWQAN RLRRRYLDWR
130
KRRLQDKLAA TQKKLDLA
CATM prediction
The sequence of YB039_HUMAN returned 2 potential models
The positions at the dimer's interface are highlighted in yellow. The position at the crossing point is highlighted in orange.
| # | Sequence and interface | d | θ | Z' | ω' | Score |
|---|---|---|---|---|---|---|
| 90 100 1 | + | + | |
(Å) | (°) | (Å) | (°) | ||
| Model 1 | ERTLQLSVLVAFASGVLLGWQAN | 7.2 | -33.9° | 1.7 | 56.9 | -28.4 |
| Model 2 | ERTLQLSVLVAFASGVLLGWQAN | 7.2 | -51.7° | 0.7 | 47.6 | -5.9 |
Click on the model number to visualize its details below.
MODEL 1 DETAILS
Precited structure:
Click on the image to enlarge
Download model 1 structure: PDB, PyMOL session
List of hydrogen bonds:
| Donor | Acceptor | Distance |
|---|---|---|
| B, 99, PHE, HA | A, 98, ALA, O | 3.17Å |
| B, 102, GLY, HA1 | A, 99, PHE, O | 3.38Å |
| A, 99, PHE, HA | B, 98, ALA, O | 3.17Å |
| A, 102, GLY, HA1 | B, 99, PHE, O | 3.38Å |
