UniProt data
UniProt name: SUSD1_HUMAN (Q6UWL2)
Gene name: SUSD1; ORFNames=UNQ2438/PRO4999
Organism: Homo sapiens (Human).
Function:
Subcellular location: Membrane {ECO:0000305}; Single-pass type I membrane protein {ECO:0000305}.
Transmembrane domains:
- 722-742, 21 AA, Helical. {ECO:0000255}.
Sequence: 747 AA
10 20 30 40 50 60
MGRGPWDAGP SRRLLPLLLL LGLARGAAGA PGPDGLDVCA TCHEHATCQQ REGKKICICN
70 80 90 100 110 120
YGFVGNGRTQ CVDKNECQFG ATLVCGNHTS CHNTPGGFYC ICLEGYRATN NNKTFIPNDG
130 140 150 160 170 180
TFCTDIDECE VSGLCRHGGR CVNTHGSFEC YCMDGYLPRN GPEPFHPTTD ATSCTEIDCG
190 200 210 220 230 240
TPPEVPDGYI IGNYTSSLGS QVRYACREGF FSVPEDTVSS CTGLGTWESP KLHCQEINCG
250 260 270 280 290 300
NPPEMRHAIL VGNHSSRLGG VARYVCQEGF ESPGGKITSV CTEKGTWRES TLTCTEILTK
310 320 330 340 350 360
INDVSLFNDT CVRWQINSRR INPKISYVIS IKGQRLDPME SVREETVNLT TDSRTPEVCL
370 380 390 400 410 420
ALYPGTNYTV NISTAPPRRS MPAVIGFQTA EVDLLEDDGS FNISIFNETC LKLNRRSRKV
430 440 450 460 470 480
GSEHMYQFTV LGQRWYLANF SHATSFNFTT REQVPVVCLD LYPTTDYTVN VTLLRSPKRH
490 500 510 520 530 540
SVQITIATPP AVKQTISNIS GFNETCLRWR SIKTADMEEM YLFHIWGQRW YQKEFAQEMT
550 560 570 580 590 600
FNISSSSRDP EVCLDLRPGT NYNVSLRALS SELPVVISLT TQITEPPLPE VEFFTVHRGP
610 620 630 640 650 660
LPRLRLRKAK EKNGPISSYQ VLVLPLALQS TFSCDSEGAS SFFSNASDAD GYVAAELLAK
670 680 690 700 710 720
DVPDDAMEIP IGDRLYYGEY YNAPLKRGSD YCIILRITSE WNKVRRHSCA VWAQVKDSSL
730 740
MLLQMAGVGL GSLAVVIILT FLSFSAV
CATM prediction
The sequence of SUSD1_HUMAN returned 2 potential models
The positions at the dimer's interface are highlighted in yellow. The position at the crossing point is highlighted in orange.
| # | Sequence and interface | d | θ | Z' | ω' | Score |
|---|---|---|---|---|---|---|
| 720 730 740 | + | + | + |
(Å) | (°) | (Å) | (°) | ||
| Model 1 | SLMLLQMAGVGLGSLAVVIILTFLSFS | 6.7 | -53.1° | 5.3 | 57.7 | -20.7 |
| Model 2 | SLMLLQMAGVGLGSLAVVIILTFLSFS | 7.0 | +54.1° | 3.3 | 80.1 | -6.4 |
Click on the model number to visualize its details below.
MODEL 1 DETAILS
Precited structure:
Click on the image to enlarge
Download model 1 structure: PDB, PyMOL session
List of hydrogen bonds:
| Donor | Acceptor | Distance |
|---|---|---|
| B, 727, GLY, HA2 | A, 724, GLN, OE1 | 2.78Å |
| B, 727, GLY, HA1 | A, 724, GLN, O | 3.36Å |
| B, 728, VAL, HA | A, 727, GLY, O | 2.82Å |
| A, 727, GLY, HA2 | B, 724, GLN, OE1 | 2.78Å |
| A, 727, GLY, HA1 | B, 724, GLN, O | 3.36Å |
| A, 728, VAL, HA | B, 727, GLY, O | 2.82Å |
