Melanoma antigen recognized by T-cells 1

UniProt data

UniProt name: MAR1_HUMAN (Q16655)

Gene name: MLANA; Synonyms=MART1

Organism: Homo sapiens (Human).

Function: Involved in melanosome biogenesis by ensuring the stability of GPR143. Plays a vital role in the expression, stability, trafficking, and processing of melanocyte protein PMEL, which is critical to the formation of stage II melanosomes. {ECO:0000269|PubMed:15695812, ECO:0000269|PubMed:19717472}.

Subcellular location: Endoplasmic reticulum membrane; Single-pass type III membrane protein. Golgi apparatus. Golgi apparatus, trans-Golgi network membrane. Melanosome. Note=Also found in small vesicles and tubules dispersed over the entire cytoplasm. A small fraction of the protein is inserted into the membrane in an inverted orientation. Inversion of membrane topology results in the relocalization of the protein from a predominant Golgi/post- Golgi area to the endoplasmic reticulum. Melanoma cells expressing the protein with an inverted membrane topology are more effectively recognized by specific cytolytic T-lymphocytes than those expressing the protein in its native membrane orientation.

Transmembrane domains:

  1. 27-47, 21 AA, Helical. {ECO:0000255}.

Sequence: 118 AA

10 20 30 40 50 60 MPREDAHFIY GYPKKGHGHS YTTAEEAAGI GILTVILGVL LLIGCWYCRR RNGYRALMDK 70 80 90 100 110 SLHVGTQCAL TRRCPQEGFD HRDSKVSLQE KNCEPVVPNA PPAYEKLSAE QSPPPYSP

CATM prediction

The sequence of MAR1_HUMAN returned 1 potential models

The positions at the dimer's interface are highlighted in yellow. The position at the crossing point is highlighted in orange.

# Sequence and interface d θ Z' ω' Score
        30        40        5
 +    |    +    |    +    |
(Å) (°) (Å) (°)  
AEEAAGIGILTVILGVLLLIGCWYCRR 6.9 -55.0° 0.9 49.9 -14.4

Click on the model number to visualize its details below.

MODEL 1 DETAILS

Precited structure:


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Download model 1 structure: PDB, PyMOL session

List of hydrogen bonds:

Donor Acceptor Distance
B, 44, GLY, HA1 A, 41, LEU, O 3.02Å
B, 45, CYS, HA A, 44, GLY, O 3.23Å
A, 44, GLY, HA1 B, 41, LEU, O 3.02Å
A, 45, CYS, HA B, 44, GLY, O 3.23Å