Oxidized low-density lipoprotein receptor 1

UniProt data

UniProt name: OLR1_HUMAN (P78380)

Gene name: OLR1; Synonyms=CLEC8A, LOX1

Organism: Homo sapiens (Human).

Function: Receptor that mediates the recognition, internalization and degradation of oxidatively modified low density lipoprotein (oxLDL) by vascular endothelial cells. OxLDL is a marker of atherosclerosis that induces vascular endothelial cell activation and dysfunction, resulting in pro-inflammatory responses, pro- oxidative conditions and apoptosis. Its association with oxLDL induces the activation of NF-kappa-B through an increased production of intracellular reactive oxygen and a variety of pro- atherogenic cellular responses including a reduction of nitric oxide (NO) release, monocyte adhesion and apoptosis. In addition to binding oxLDL, it acts as a receptor for the HSP70 protein involved in antigen cross-presentation to naive T-cells in dendritic cells, thereby participating in cell-mediated antigen cross-presentation. Also involved in inflammatory process, by acting as a leukocyte-adhesion molecule at the vascular interface in endotoxin-induced inflammation. Also acts as a receptor for advanced glycation end (AGE) products, activated platelets, monocytes, apoptotic cells and both Gram-negative and Gram- positive bacteria. {ECO:0000269|PubMed:11821063, ECO:0000269|PubMed:12354387, ECO:0000269|PubMed:9052782}.

Subcellular location: Cell membrane; Lipid-anchor. Cell membrane; Single-pass type II membrane protein. Membrane raft. Secreted. Note=A secreted form also exists. Localization to membrane rafts requires palmitoylation.

Transmembrane domains:

  1. 37-57, 21 AA, Helical; Signal-anchor for type II membrane protein. {ECO:0000255}.

Sequence: 273 AA

10 20 30 40 50 60 MTFDDLKIQT VKDQPDEKSN GKKAKGLQFL YSPWWCLAAA TLGVLCLGLV VTIMVLGMQL 70 80 90 100 110 120 SQVSDLLTQE QANLTHQKKK LEGQISARQQ AEEASQESEN ELKEMIETLA RKLNEKSKEQ 130 140 150 160 170 180 MELHHQNLNL QETLKRVANC SAPCPQDWIW HGENCYLFSS GSFNWEKSQE KCLSLDAKLL 190 200 210 220 230 240 KINSTADLDF IQQAISYSSF PFWMGLSRRN PSYPWLWEDG SPLMPHLFRV RGAVSQTYPS 250 260 270 GTCAYIQRGA VYAENCILAA FSICQKKANL RAQ

CATM prediction

The sequence of OLR1_HUMAN returned 2 potential models

The positions at the dimer's interface are highlighted in yellow. The position at the crossing point is highlighted in orange.

# Sequence and interface d θ Z' ω' Score
        40        50        6
 +    |    +    |    +    |
(Å) (°) (Å) (°)  
WWCLAAATLGVLCLGLVVTIMVLGMQL 7.4 -50.1° 2.8 47.2 -21.2
WWCLAAATLGVLCLGLVVTIMVLGMQL 7.0 -54.0° 4.8 41.0 -9.0

Click on the model number to visualize its details below.

MODEL 1 DETAILS

Precited structure:


Click on the image to enlarge

Download model 1 structure: PDB, PyMOL session

List of hydrogen bonds:

Donor Acceptor Distance
B, 45, LEU, HA A, 44, VAL, O 3.40Å
B, 48, GLY, HA1 A, 45, LEU, O 3.36Å
B, 49, LEU, HA A, 52, THR, OG1 2.75Å
A, 45, LEU, HA B, 44, VAL, O 3.40Å
A, 48, GLY, HA1 B, 45, LEU, O 3.36Å
A, 49, LEU, HA B, 52, THR, OG1 2.75Å