UniProt data
UniProt name: VAMP1_HUMAN (P23763)
Gene name: VAMP1; Synonyms=SYB1
Organism: Homo sapiens (Human).
Function: Involved in the targeting and/or fusion of transport vesicles to their target membrane.
Subcellular location: Isoform 3: Mitochondrion outer membrane; Single-pass type IV membrane protein.
Transmembrane domains:
- 97-116, 20 AA, Helical; Anchor for type IV membrane protein. {ECO:0000255}.
Sequence: 118 AA
10 20 30 40 50 60
MSAPAQPPAE GTEGTAPGGG PPGPPPNMTS NRRLQQTQAQ VEEVVDIIRV NVDKVLERDQ
70 80 90 100 110
KLSELDDRAD ALQAGASQFE SSAAKLKRKY WWKNCKMMIM LGAICAIIVV VIVIYFFT
CATM prediction
The sequence of VAMP1_HUMAN returned 1 potential models
The positions at the dimer's interface are highlighted in yellow. The position at the crossing point is highlighted in orange.
| # | Sequence and interface | d | θ | Z' | ω' | Score |
|---|---|---|---|---|---|---|
| 100 110 + | + | + |
(Å) | (°) | (Å) | (°) | ||
| Model 1 | NCKMMIMLGAICAIIVVVIVIYFFT | 6.9 | -47.0° | 2.2 | 44.8 | -27.7 |
Click on the model number to visualize its details below.
MODEL 1 DETAILS
Precited structure:
Click on the image to enlarge
Download model 1 structure: PDB, PyMOL session
List of hydrogen bonds:
| Donor | Acceptor | Distance |
|---|---|---|
| B, 99, ILE, HA | A, 98, MET, O | 3.05Å |
| B, 102, GLY, HA1 | A, 99, ILE, O | 2.78Å |
| B, 103, ALA, HA | A, 102, GLY, O | 3.14Å |
| A, 99, ILE, HA | B, 98, MET, O | 3.05Å |
| A, 102, GLY, HA1 | B, 99, ILE, O | 2.78Å |
| A, 103, ALA, HA | B, 102, GLY, O | 3.14Å |