UniProt data
UniProt name: C1C1L_HUMAN (P0DN25)
Gene name: C1GALT1C1L {ECO:0000312|HGNC:HGNC:51617}
Organism: Homo sapiens (Human).
Function:
Subcellular location: Membrane {ECO:0000305}; Single-pass type II membrane protein {ECO:0000305}.
Transmembrane domains:
- 9-29, 21 AA, Helical; Signal-anchor for type II membrane protein. {ECO:0000255}.
Sequence: 315 AA
10 20 30 40 50 60
MVSASGTSFF KGMLLGSISW VLITMFGQIH IRHRGQTQDH EHHHLRPPNR NDFLNTSKVI
70 80 90 100 110 120
LLELSKSIRV FCIIFGESED ESYWAVLKET WTKHCDKAEL YDTKNDNLFN IESNDRWVQM
130 140 150 160 170 180
RTAYKYVFEK YGDNYNWFFL ALPTTFAVIE NLKYLLFTRD ASQPFYLGHT VIFGDLEYVT
190 200 210 220 230 240
VEGGIVLSRE LMKRLNRLLD NSETCADQSV IWKLSEDKQL AICLKYAGVH AENAEDYEGR
250 260 270 280 290 300
DVFNTKPIAQ LIEEALSNNP QQVVEGCCSD MAITFNGLTP QKMEVMMYGL YRLRAFGHYF
310
NDTLVFLPPV GSEND
CATM prediction
The sequence of C1C1L_HUMAN returned 4 potential models
The positions at the dimer's interface are highlighted in yellow. The position at the crossing point is highlighted in orange.
| # | Sequence and interface | d | θ | Z' | ω' | Score |
|---|---|---|---|---|---|---|
| 10 20 30 | + | + | |
(Å) | (°) | (Å) | (°) | ||
| Model 1 | GTSFFKGMLLGSISWVLITMFGQIHIR | 6.4 | -44.0° | 0.9 | 46.0 | -44.4 |
| Model 2 | GTSFFKGMLLGSISWVLITMFGQIHIR | 7.0 | -27.0° | 4.2 | 52.0 | -34.4 |
| Model 3 | GTSFFKGMLLGSISWVLITMFGQIHIR | 6.9 | -55.0° | 2.4 | 48.0 | -23.1 |
| Model 4 | GTSFFKGMLLGSISWVLITMFGQIHIR | 7.2 | -53.1° | 3.1 | 34.2 | -15.7 |
Click on the model number to visualize its details below.
MODEL 1 DETAILS
Precited structure:
Click on the image to enlarge
Download model 1 structure: PDB, PyMOL session
List of hydrogen bonds:
| Donor | Acceptor | Distance |
|---|---|---|
| B, 12, GLY, HA1 | A, 9, PHE, O | 2.44Å |
| B, 13, MET, HA | A, 12, GLY, O | 2.50Å |
| B, 16, GLY, HA1 | A, 13, MET, O | 3.42Å |
| A, 12, GLY, HA1 | B, 9, PHE, O | 2.44Å |
| A, 13, MET, HA | B, 12, GLY, O | 2.50Å |
| A, 16, GLY, HA1 | B, 13, MET, O | 3.42Å |
