UniProt data
UniProt name: GLPB_HUMAN (P06028)
Gene name: GYPB; Synonyms=GPB
Organism: Homo sapiens (Human).
Function: This protein is a minor sialoglycoprotein in erythrocyte membranes.
Subcellular location: Cell membrane; Single-pass type I membrane protein.
Transmembrane domains:
- 60-81, 22 AA, Helical. {ECO:0000255}.
Sequence: 91 AA
CATM prediction
The sequence of GLPB_HUMAN returned 2 potential models
The positions at the dimer's interface are highlighted in yellow. The position at the crossing point is highlighted in orange.
| # | Sequence and interface | d | θ | Z' | ω' | Score |
|---|---|---|---|---|---|---|
| 60 70 80 | + | + | |
(Å) | (°) | (Å) | (°) | ||
| Model 1 | VAAAVVIILIILCVMAGIIGTILLISYS | 7.3 | -53.8° | 2.9 | 51.0 | -22.2 |
| Model 2 | VAAAVVIILIILCVMAGIIGTILLISYS | 6.8 | -54.9° | 4.2 | 37.9 | -14.9 |
| Prolines* | VPAPVVIILIILCVMAGIIGTILLISYS |
* Note: this sequence contains Pro residues. CATM substituted them with Ala during the modeling. The positions are marked.
Click on the model number to visualize its details below.
MODEL 1 DETAILS
Precited structure:
Click on the image to enlarge
Download model 1 structure: PDB, PyMOL session
List of hydrogen bonds:
| Donor | Acceptor | Distance |
|---|---|---|
| B, 70, VAL, HA | A, 69, CYS, O | 3.39Å |
| B, 73, GLY, HA1 | A, 70, VAL, O | 3.31Å |
| B, 74, ILE, HA | A, 77, THR, OG1 | 2.87Å |
| A, 70, VAL, HA | B, 69, CYS, O | 3.39Å |
| A, 73, GLY, HA1 | B, 70, VAL, O | 3.31Å |
| A, 74, ILE, HA | B, 77, THR, OG1 | 2.87Å |
