UniProt data
UniProt name: ERVV1_HUMAN (B6SEH8)
Gene name: ERVV-1; Synonyms=ENVV1
Organism: Homo sapiens (Human).
Function:
Subcellular location: Membrane {ECO:0000305}; Single-pass type I membrane protein {ECO:0000305}.
Transmembrane domains:
- 322-342, 21 AA, Helical. {ECO:0000255}.
Sequence: 477 AA
CATM prediction
The sequence of ERVV1_HUMAN returned 6 potential models
The positions at the dimer's interface are highlighted in yellow. The position at the crossing point is highlighted in orange.
| # | Sequence and interface | d | θ | Z' | ω' | Score |
|---|---|---|---|---|---|---|
| 320 330 340 | + | + | + |
(Å) | (°) | (Å) | (°) | ||
| Model 1 | KRALGLILAGMGAAIGMIAAWGGFTYH | 6.4 | -40.6° | 0.6 | 43.1 | -35.3 |
| Model 2 | KRALGLILAGMGAAIGMIAAWGGFTYH | 6.7 | -51.6° | 1.3 | 57.2 | -24.0 |
| Model 3 | KRALGLILAGMGAAIGMIAAWGGFTYH | 7.0 | -49.0° | 1.8 | 44.9 | -23.4 |
| Model 4 | KRALGLILAGMGAAIGMIAAWGGFTYH | 7.3 | -35.0° | 5.0 | 35.0 | -3.5 |
| Model 5 | KRALGLILAGMGAAIGMIAAWGGFTYH | 7.1 | -40.0° | 2.7 | 34.0 | -3.4 |
| Model 6 | KRALGLILAGMGAAIGMIAAWGGFTYH | 6.9 | -55.2° | 3.6 | 63.1 | -1.5 |
| Prolines* | KRALGLILAGMGAAIGMIAPWGGFTYH |
* Note: this sequence contains Pro residues. CATM substituted them with Ala during the modeling. The positions are marked.
Click on the model number to visualize its details below.
MODEL 1 DETAILS
Precited structure:
Click on the image to enlarge
Download model 1 structure: PDB, PyMOL session
List of hydrogen bonds:
| Donor | Acceptor | Distance |
|---|---|---|
| B, 327, ALA, HA | A, 326, LEU, O | 2.83Å |
| B, 330, GLY, HA1 | A, 327, ALA, O | 2.41Å |
| B, 331, ALA, HA | A, 330, GLY, O | 2.32Å |
| B, 334, GLY, HA1 | A, 331, ALA, O | 3.06Å |
| A, 327, ALA, HA | B, 326, LEU, O | 2.83Å |
| A, 330, GLY, HA1 | B, 327, ALA, O | 2.41Å |
| A, 331, ALA, HA | B, 330, GLY, O | 2.32Å |
| A, 334, GLY, HA1 | B, 331, ALA, O | 3.06Å |
